If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ), 'gf_id' => 'HOM05D000654', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000654' ), 'data_identifier' => 'HOM05D000654', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '873', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02620' => 'bna', 'A04p17850' => 'bna', 'A05p30250' => 'bna', 'A05p42320' => 'bna', 'A06p15960' => 'bna', 'A07p42990' => 'bna', 'A08p05390' => 'bna', 'A08p29680' => 'bna', 'A09p56950' => 'bna', 'Aa31LG4G7670' => 'aar', 'Aa31LG4G7690' => 'aar', 'Aa31LG5G15760' => 'aar', 'Aa31LG6G13060' => 'aar', 'Aa31LG7G13610' => 'aar', 'Aa31LG7G4340' => 'aar', 'Aa31LG8G6120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2124' => 'aag', 'Actinidia00426' => 'ach', 'Actinidia02621' => 'ach', 'Actinidia12866' => 'ach', 'Actinidia12934' => 'ach', 'Actinidia15408' => 'ach', 'Actinidia16473' => 'ach', 'Actinidia16515' => 'ach', 'Actinidia16516' => 'ach', 'Actinidia16969' => 'ach', 'Actinidia16970' => 'ach', 'Actinidia16971' => 'ach', 'Actinidia25413' => 'ach', 'Actinidia25414' => 'ach', 'Actinidia26818' => 'ach', 'Actinidia37927' => 'ach', 'Ah.02g117680' => 'amhyb', 'Ah.03g145390' => 'amhyb', 'Ah.05g166680' => 'amhyb', 'Ah.05g171080' => 'amhyb', 'Ah.06g188580' => 'amhyb', 'Ah.11g042800' => 'amhyb', 'AL1G32550' => 'aly', 'AL1G35010' => 'aly', 'AL1G54330' => 'aly', 'AL1G54350' => 'aly', 'AL2G37790' => 'aly', 'AL2G38130' => 'aly', 'AL3G15710' => 'aly', 'AL3G32770' => 'aly', 'AL4G13270' => 'aly', 'AL7G14920' => 'aly', 'Aqoxy5G01187' => 'aox', 'Aqoxy6G00220' => 'aox', 'Aqoxy6G01261' => 'aox', 'Aqoxy6G02311' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H1B5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2PR50U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1D6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76W0IE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7H0H8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86KBF0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1CQIQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHM0Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5ZVLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0RA2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8XTDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7WRT5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEX4VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJHC0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFHL3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RQMB8Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3YNI7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU01D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4GZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YG0QBR' => 'arhy', 'AT1G19835' => 'ath', 'AT1G21810' => 'ath', 'AT1G47900' => 'ath', 'AT1G77580' => 'ath', 'AT2G23360' => 'ath', 'AT2G24470' => 'ath', 'AT3G05270' => 'ath', 'AT3G19370' => 'ath', 'AT4G36120' => 'ath', 'ATR0584G041' => 'atr', 'ATR0762G056' => 'atr', 'ATR0996G001' => 'atr', 'ATR0996G010' => 'atr', 'Atru.chr13.1463' => 'acertr', 'Atru.chr13.1485' => 'acertr', 'Atru.chr13.320' => 'acertr', 'Atru.chr3.291' => 'acertr', 'Atru.chr3.292' => 'acertr', 'Atru.chr3.788' => 'acertr', 'Atru.chr4.1113' => 'acertr', 'Atru.chr5.2642' => 'acertr', 'Atru.chr5.2648' => 'acertr', 'AUR62000554' => 'cqu', 'AUR62001903' => 'cqu', 'AUR62003909' => 'cqu', 'AUR62006906' => 'cqu', 'AUR62010253' => 'cqu', 'AUR62013235' => 'cqu', 'AUR62014336' => 'cqu', 'AUR62019078' => 'cqu', 'AUR62035443' => 'cqu', 'AUR62035737' => 'cqu', 'BcaB01g02019' => 'bca', 'BcaB03g12899' => 'bca', 'BcaB03g14371' => 'bca', 'BcaB03g15943' => 'bca', 'BcaB04g17474' => 'bca', 'BcaB04g19275' => 'bca', 'BcaB04g19546' => 'bca', 'BcaB04g19547' => 'bca', 'BcaB06g25988' => 'bca', 'BcaB06g27895' => 'bca', 'BcaB07g32000' => 'bca', 'BcaB07g33806' => 'bca', 'BcaC01g03631' => 'bca', 'BcaC05g25859' => 'bca', 'BcaC05g28491' => 'bca', 'BcaC05g30015' => 'bca', 'BcaC05g30140' => 'bca', 'BcaC07g37187' => 'bca', 'BcaC07g38998' => 'bca', 'BcaC07g40989' => 'bca', 'BcaC07g40990' => 'bca', 'BcaC08g42987' => 'bca', 'BcaC08g42988' => 'bca', 'BcaC08g47602' => 'bca', 'BcaNung00762' => 'bca', 'BolC1t00277H' => 'bol', 'BolC3t16427H' => 'bol', 'BolC5t30533H' => 'bol', 'BolC5t33297H' => 'bol', 'BolC5t34852H' => 'bol', 'BolC6t40181H' => 'bol', 'BolC7t42903H' => 'bol', 'BolC8t47423H' => 'bol', 'BolC8t49609H' => 'bol', 'BolC8t51564H' => 'bol', 'BraA01t00248Z' => 'bra', 'BraA03t12581Z' => 'bra', 'BraA04t17404Z' => 'bra', 'BraA05t21863Z' => 'bra', 'BraA05t23019Z' => 'bra', 'BraA06t24706Z' => 'bra', 'BraA07t31820Z' => 'bra', 'BraA08t32543Z' => 'bra', 'BraA08t34903Z' => 'bra', 'BraA09t41087Z' => 'bra', 'C01p02910' => 'bna', 'C04p52750' => 'bna', 'C05p18260' => 'bna', 'C05p45770' => 'bna', 'C05p61920' => 'bna', 'C06p02280' => 'bna', 'C06p02290' => 'bna', 'C06p02300' => 'bna', 'C07p23750' => 'bna', 'C08p05830' => 'bna', 'C08p19720' => 'bna', 'C08p39910' => 'bna', 'CAN.G1666.1' => 'can', 'CAN.G16883.1' => 'can', 'CAN.G27.45' => 'can', 'CAN.G311.4' => 'can', 'CAN.G36.15' => 'can', 'CAN.G385.11' => 'can', 'CAN.G437.20' => 'can', 'CAN.G506.11' => 'can', 'CAN.G537.9' => 'can', 'CAN.G640.1' => 'can', 'CAN.G791.1' => 'can', 'CAN.G802.3' => 'can', 'CAN.G938.4' => 'can', 'CANSAT01G2067' => 'cansat', 'CANSAT25G0706' => 'cansat', 'CANSAT25G0926' => 'cansat', 'CANSAT25G1866' => 'cansat', 'CANSAT25G1938' => 'cansat', 'CARHR020330' => 'chi', 'CARHR022180' => 'chi', 'CARHR037490' => 'chi', 'CARHR071090' => 'chi', 'CARHR079610' => 'chi', 'CARHR094770' => 'chi', 'CARHR244520' => 'chi', 'CARHR292990' => 'chi', 'Carub.0001s1935' => 'cru', 'Carub.0001s2126' => 'cru', 'Carub.0001s3700' => 'cru', 'Carub.0002s2447' => 'cru', 'Carub.0003s0452' => 'cru', 'Carub.0003s1919' => 'cru', 'Carub.0004s0256' => 'cru', 'Carub.0007s0411' => 'cru', 'Ca_02054_v3' => 'car', 'Ca_12627_v3' => 'car', 'Ca_12631_v3' => 'car', 'Ca_13408_v3' => 'car', 'Ca_17002_v3' => 'car', 'Ca_17609_v3' => 'car', 'Ca_18710_v3' => 'car', 'Ca_22150_v3' => 'car', 'Ca_24753_v3' => 'car', 'Ca_24911_v3' => 'car', 'Ca_31075_v3' => 'car', 'Cc02_g19000' => 'ccan', 'Cc07_g06180' => 'ccan', 'Cc07_g19530' => 'ccan', 'Cc10_g01870' => 'ccan', 'Cc10_g11930' => 'ccan', 'CDE01G0460' => 'cde', 'CDE01G0505' => 'cde', 'CDE02G0587' => 'cde', 'CDE02G0922' => 'cde', 'CDE02G3905' => 'cde', 'CDE02G4022' => 'cde', 'CDE02G4609' => 'cde', 'CDE05G0850' => 'cde', 'CDE05G1966' => 'cde', 'CDE06G0896' => 'cde', 'CDE06G1618' => 'cde', 'CDE07G0323' => 'cde', 'CDE08G0822' => 'cde', 'CDE08G1168' => 'cde', 'CDE08G1638' => 'cde', 'CDE09G0315' => 'cde', 'CDE09G0447' => 'cde', 'CDE09G0555' => 'cde', 'Cfa004040' => 'cfa', 'Cfa004546' => 'cfa', 'Cfa013930' => 'cfa', 'Ciclev10000102m.g' => 'ccl', 'Ciclev10000438m.g' => 'ccl', 'Ciclev10000549m.g' => 'ccl', 'Ciclev10024767m.g' => 'ccl', 'Ciclev10027734m.g' => 'ccl', 'CiPaw.01G015400' => 'cil', 'CiPaw.01G015700' => 'cil', 'CiPaw.02G007300' => 'cil', 'CiPaw.03G115400' => 'cil', 'CiPaw.04G077200' => 'cil', 'CiPaw.05G221200' => 'cil', 'CiPaw.06G031100' => 'cil', 'CiPaw.06G171400' => 'cil', 'CiPaw.07G152200' => 'cil', 'CiPaw.08G064900' => 'cil', 'ClCG02G012260' => 'cla', 'ClCG05G018460' => 'cla', 'ClCG08G005650' => 'cla', 'COL.COLO4_08076' => 'col', 'COL.COLO4_12114' => 'col', 'COL.COLO4_21926' => 'col', 'COL.COLO4_24562' => 'col', 'COL.COLO4_26167' => 'col', 'COL.COLO4_32628' => 'col', 'Cpa.g.sc200.26' => 'cpa', 'Cpa.g.sc26.28' => 'cpa', 'Cpa.g.sc37.39' => 'cpa', 'Cpa.g.sc55.117' => 'cpa', 'Cpa.g.sc6.234' => 'cpa', 'Cpa.g.sc6.235' => 'cpa', 'Cpa.g.sc64.89' => 'cpa', 'CsaV3_2G016410' => 'csa', 'CsaV3_3G045720' => 'csa', 'CsaV3_6G034470' => 'csa', 'CSS0002986' => 'camsi', 'CSS0003390' => 'camsi', 'CSS0004077' => 'camsi', 'CSS0009975' => 'camsi', 'CSS0011582' => 'camsi', 'CSS0013859' => 'camsi', 'CSS0018882' => 'camsi', 'CSS0019799' => 'camsi', 'CSS0022991' => 'camsi', 'CSS0024557' => 'camsi', 'CSS0032181' => 'camsi', 'CSS0033667' => 'camsi', 'CSS0035468' => 'camsi', 'CSS0037405' => 'camsi', 'CSS0039056' => 'camsi', 'CSS0041562' => 'camsi', 'CSS0042532' => 'camsi', 'CSS0047388' => 'camsi', 'DCAR_002180' => 'dca', 'DCAR_007896' => 'dca', 'DCAR_009932' => 'dca', 'DCAR_013857' => 'dca', 'DCAR_014389' => 'dca', 'DCAR_016683' => 'dca', 'DCAR_017492' => 'dca', 'DCAR_022435' => 'dca', 'DCAR_025746' => 'dca', 'DCAR_029074' => 'dca', 'DCAR_030969' => 'dca', 'Dinv07216' => 'din', 'Dinv07217' => 'din', 'Dinv15735' => 'din', 'Dinv26842' => 'din', 'Dinv27310' => 'din', 'Dinv30010' => 'din', 'Dinv39504' => 'din', 'Dinv39505' => 'din', 'Dinv40960' => 'din', 'Dinv42171' => 'din', 'Duzib041G0583' => 'dzi', 'Duzib052G0555' => 'dzi', 'Duzib093G0185' => 'dzi', 'Duzib116G0257' => 'dzi', 'Duzib116G0522' => 'dzi', 'Duzib132G0921' => 'dzi', 'Duzib147G0808' => 'dzi', 'Duzib147G0904' => 'dzi', 'Duzib147G1082' => 'dzi', 'Duzib147G1504' => 'dzi', 'Duzib187G1539' => 'dzi', 'ECA232G1682' => 'eca', 'ECA233G0798' => 'eca', 'ECA233G4620' => 'eca', 'ECA234G4790' => 'eca', 'ECA238G0758' => 'eca', 'ECA240G2518' => 'eca', 'ECA246G2305' => 'eca', 'ECA248G3221' => 'eca', 'EL10Ac1g01014' => 'bvu', 'EL10Ac1g02272' => 'bvu', 'EL10Ac2g02903' => 'bvu', 'EL10Ac2g04040' => 'bvu', 'EL10Ac4g08603' => 'bvu', 'EL10Ac4g08625' => 'bvu', 'EL10Ac4g09664' => 'bvu', 'EL10Ac6g14150' => 'bvu', 'EL10Ac6g14783' => 'bvu', 'EL10Ac6g15720' => 'bvu', 'EL10Ac8g19166' => 'bvu', 'EL10Ac9g22323' => 'bvu', 'EL10Ac9g22384' => 'bvu', 'Eucgr.A02425' => 'egr', 'Eucgr.B01257' => 'egr', 'Eucgr.C00470' => 'egr', 'Eucgr.F01634' => 'egr', 'Eucgr.F02084' => 'egr', 'Eucgr.F04348' => 'egr', 'Eucgr.G01092' => 'egr', 'Eucgr.G01415' => 'egr', 'Eucgr.G01544' => 'egr', 'Eucgr.G01602' => 'egr', 'Eucgr.H01691' => 'egr', 'Eucgr.H02071' => 'egr', 'Eucgr.H05077' => 'egr', 'Eucgr.I02359' => 'egr', 'Eucgr.L00498' => 'egr', 'FAN15G0588' => 'fan', 'FAN15G0872' => 'fan', 'FAN15G1189' => 'fan', 'FAN19G0868' => 'fan', 'FAN19G1344' => 'fan', 'FAN20G1948' => 'fan', 'FAN20G2000' => 'fan', 'FAN20G2103' => 'fan', 'FAN23G0506' => 'fan', 'FAN23G2009' => 'fan', 'FAN23G2741' => 'fan', 'FAN24G3010' => 'fan', 'FAN24G3269' => 'fan', 'FAN26G0108' => 'fan', 'FAN26G0370' => 'fan', 'FAN26G1873' => 'fan', 'FAN27G2242' => 'fan', 'FAN27G2802' => 'fan', 'FAN27G3193' => 'fan', 'FAN28G1367' => 'fan', 'FAN28G2592' => 'fan', 'FvH4_1g16340' => 'fve', 'FvH4_1g25530' => 'fve', 'FvH4_2g05731' => 'fve', 'FvH4_2g26980' => 'fve', 'FvH4_2g38730' => 'fve', 'Glyma.01G167200' => 'gma', 'Glyma.01G188200' => 'gma', 'Glyma.02G103700' => 'gma', 'Glyma.04G025400' => 'gma', 'Glyma.04G207700' => 'gma', 'Glyma.04G249600' => 'gma', 'Glyma.05G091800' => 'gma', 'Glyma.05G195600' => 'gma', 'Glyma.06G025400' => 'gma', 'Glyma.06G113300' => 'gma', 'Glyma.06G158100' => 'gma', 'Glyma.07G215000' => 'gma', 'Glyma.08G003200' => 'gma', 'Glyma.11G053900' => 'gma', 'Glyma.11G076100' => 'gma', 'Glyma.13G078500' => 'gma', 'Glyma.14G150900' => 'gma', 'Glyma.14G217900' => 'gma', 'Glyma.15G229502' => 'gma', 'Glyma.17G170600' => 'gma', 'Glyma.17G256900' => 'gma', 'Gohir.A01G111900' => 'ghi', 'Gohir.A02G156500' => 'ghi', 'Gohir.A03G187900' => 'ghi', 'Gohir.A05G187700' => 'ghi', 'Gohir.A05G235200' => 'ghi', 'Gohir.A06G005200' => 'ghi', 'Gohir.A06G044900' => 'ghi', 'Gohir.A10G067800' => 'ghi', 'Gohir.A11G041700' => 'ghi', 'Gohir.A11G195200' => 'ghi', 'Gohir.A13G042400' => 'ghi', 'Gohir.D01G098800' => 'ghi', 'Gohir.D02G208700' => 'ghi', 'Gohir.D03G024200' => 'ghi', 'Gohir.D05G190700' => 'ghi', 'Gohir.D05G237500' => 'ghi', 'Gohir.D06G001000' => 'ghi', 'Gohir.D06G045400' => 'ghi', 'Gohir.D10G107200' => 'ghi', 'Gohir.D11G045000' => 'ghi', 'Gohir.D11G201400' => 'ghi', 'Gohir.D13G040800' => 'ghi', 'Gorai.002G124100' => 'gra', 'Gorai.003G025700' => 'gra', 'Gorai.005G236700' => 'gra', 'Gorai.007G048300' => 'gra', 'Gorai.007G215800' => 'gra', 'Gorai.009G195900' => 'gra', 'Gorai.009G245900' => 'gra', 'Gorai.010G005400' => 'gra', 'Gorai.010G050400' => 'gra', 'Gorai.011G117600' => 'gra', 'Gorai.013G045800' => 'gra', 'GSVIVG01008864001' => 'vvi', 'GSVIVG01008865001' => 'vvi', 'GSVIVG01009871001' => 'vvi', 'GSVIVG01018797001' => 'vvi', 'GSVIVG01022085001' => 'vvi', 'GSVIVG01022086001' => 'vvi', 'GSVIVG01022370001' => 'vvi', 'GSVIVG01031711001' => 'vvi', 'HanXRQChr01g0017041' => 'han', 'HanXRQChr03g0070111' => 'han', 'HanXRQChr05g0151081' => 'han', 'HanXRQChr09g0263601' => 'han', 'HanXRQChr10g0302961' => 'han', 'HanXRQChr10g0304071' => 'han', 'HanXRQChr12g0367181' => 'han', 'HanXRQChr12g0380461' => 'han', 'HanXRQChr14g0448971' => 'han', 'HanXRQChr15g0468981' => 'han', 'HanXRQChr16g0514991' => 'han', 'HanXRQChr16g0531801' => 'han', 'Haze_00438' => 'cav', 'Haze_22613' => 'cav', 'Hma1.2p1_0129F.1_g060210' => 'hma', 'Hma1.2p1_0337F.1_g129150' => 'hma', 'Hma1.2p1_0474F.1_g160560' => 'hma', 'Hma1.2p1_0619F.1_g190450' => 'hma', 'Hma1.2p1_0638F.1_g193700' => 'hma', 'Hma1.2p1_0670F.1_g200430' => 'hma', 'Hma1.2p1_1519F.1_g288570' => 'hma', 'HPP92_001574' => 'vpl', 'HPP92_005703' => 'vpl', 'HPP92_011942' => 'vpl', 'HPP92_011961' => 'vpl', 'HPP92_015275' => 'vpl', 'HPP92_020981' => 'vpl', 'HPP92_026438' => 'vpl', 'HPP92_027167' => 'vpl', 'HPP92_027168' => 'vpl', 'Hund00118' => 'sun', 'Hund05195' => 'sun', 'Hund07210' => 'sun', 'Hund13539' => 'sun', 'Hund21790' => 'sun', 'Hund26808' => 'sun', 'Lalb_Chr04g0253441' => 'lal', 'Lalb_Chr05g0219301' => 'lal', 'Lalb_Chr05g0226431' => 'lal', 'Lalb_Chr07g0184181' => 'lal', 'Lalb_Chr09g0321821' => 'lal', 'Lalb_Chr10g0101661' => 'lal', 'Lalb_Chr11g0061971' => 'lal', 'Lalb_Chr12g0202911' => 'lal', 'Lalb_Chr14g0369801' => 'lal', 'Lalb_Chr16g0384851' => 'lal', 'Lalb_Chr17g0343731' => 'lal', 'Lalb_Chr23g0272721' => 'lal', 'Lalb_Chr24g0398761' => 'lal', 'Lj1g0010484' => 'lja', 'Lj1g0018918' => 'lja', 'Lj2A608T38' => 'lonja', 'Lj2g0008691' => 'lja', 'Lj2g0028163' => 'lja', 'Lj3C823T10' => 'lonja', 'Lj3C823T11' => 'lonja', 'Lj4A152G33' => 'lonja', 'Lj4A27T23' => 'lonja', 'Lj4A795T32' => 'lonja', 'Lj4g0013441' => 'lja', 'Lj4g0021514' => 'lja', 'Lj4g0027816' => 'lja', 'Lj5g0005623' => 'lja', 'Lj7A341T31' => 'lonja', 'Lj7C341T3' => 'lonja', 'Lju12250C0G3' => 'lonja', 'Lju12250C0T2' => 'lonja', 'Lsat_1_v5_gn_1_80680' => 'lsa', 'Lsat_1_v5_gn_2_85241' => 'lsa', 'Lsat_1_v5_gn_4_165141' => 'lsa', 'Lsat_1_v5_gn_5_115681' => 'lsa', 'Lsat_1_v5_gn_5_115721' => 'lsa', 'Lsat_1_v5_gn_5_69380' => 'lsa', 'Lsat_1_v5_gn_6_112901' => 'lsa', 'Lsat_1_v5_gn_7_77260' => 'lsa', 'Lsat_1_v5_gn_8_30420' => 'lsa', 'Lsat_1_v5_gn_9_110760' => 'lsa', 'Manes.02G163500' => 'mes', 'Manes.05G149600' => 'mes', 'Manes.07G077000' => 'mes', 'Manes.12G106300' => 'mes', 'Manes.13G079600' => 'mes', 'Manes.13G121000' => 'mes', 'Manes.18G015200' => 'mes', 'Manes.18G077439' => 'mes', 'Mapoly0001s0427' => 'mpo', 'MBI05_g37300_MAGBIO' => 'mbi', 'MBI09_g42045_MAGBIO' => 'mbi', 'MBI16_g07662_MAGBIO' => 'mbi', 'MD02G1175900' => 'mdo', 'MD05G1084800' => 'mdo', 'MD08G1015000' => 'mdo', 'MD08G1162500' => 'mdo', 'MD15G1138800' => 'mdo', 'MD15G1286300' => 'mdo', 'MD15G1348000' => 'mdo', 'Medtr1g024095' => 'mtr', 'Medtr1g030010' => 'mtr', 'Medtr3g096990' => 'mtr', 'Medtr3g113290' => 'mtr', 'Medtr4g085570' => 'mtr', 'Medtr4g094848' => 'mtr', 'Medtr5g016830' => 'mtr', 'Medtr5g021810' => 'mtr', 'Medtr8g094760' => 'mtr', 'MELO3C003764.2' => 'cme', 'MELO3C010611.2' => 'cme', 'MELO3C020850.2' => 'cme', 'Migut.B00366' => 'egut', 'Migut.C00813' => 'egut', 'Migut.K00771' => 'egut', 'Migut.K01219' => 'egut', 'Migut.L00270' => 'egut', 'Migut.L00583' => 'egut', 'Migut.N03149' => 'egut', 'Migut.N03280' => 'egut', 'MSTRG.1206' => 'ama', 'MSTRG.1439' => 'ama', 'MSTRG.15381' => 'ama', 'MSTRG.16729' => 'ama', 'MSTRG.22335' => 'ama', 'MSTRG.23734' => 'ama', 'MSTRG.25231' => 'ama', 'MSTRG.25380' => 'ama', 'MSTRG.3599' => 'ama', 'Nitab4.5_0000322g0170' => 'nta', 'Nitab4.5_0000856g0180' => 'nta', 'Nitab4.5_0001221g0040' => 'nta', 'Nitab4.5_0001242g0010' => 'nta', 'Nitab4.5_0001428g0010' => 'nta', 'Nitab4.5_0001803g0040' => 'nta', 'Nitab4.5_0001988g0050' => 'nta', 'Nitab4.5_0001996g0070' => 'nta', 'Nitab4.5_0002740g0020' => 'nta', 'Nitab4.5_0002765g0080' => 'nta', 'Nitab4.5_0003536g0030' => 'nta', 'Nitab4.5_0004044g0010' => 'nta', 'Nitab4.5_0010345g0020' => 'nta', 'Nn1g04786' => 'nnu', 'Nn1g08795' => 'nnu', 'Nn5g28299' => 'nnu', 'Nn5g29284' => 'nnu', 'Nn5g30356' => 'nnu', 'Nn6g32311' => 'nnu', 'Oeu007299.1' => 'oeu', 'Oeu007344.1' => 'oeu', 'Oeu007929.1' => 'oeu', 'Oeu009820.1' => 'oeu', 'Oeu013727.1' => 'oeu', 'Oeu017453.2' => 'oeu', 'Oeu017483.1' => 'oeu', 'Oeu024531.1' => 'oeu', 'Oeu027546.2' => 'oeu', 'Oeu028235.1' => 'oeu', 'Oeu037846.2' => 'oeu', 'Oeu046259.1' => 'oeu', 'Oeu050104.2' => 'oeu', 'Oeu054705.1' => 'oeu', 'Oeu054706.1' => 'oeu', 'Os02g0614600' => 'osa', 'Os04g0505000' => 'osa', 'Os04g0649200' => 'osa', 'Os07g0506600' => 'osa', 'Os10g0162400' => 'osa', 'Os11g0170200' => 'osa', 'Os12g0169100' => 'osa', 'Peaxi162Scf00016g02037' => 'pax', 'Peaxi162Scf00051g00107' => 'pax', 'Peaxi162Scf00186g00065' => 'pax', 'Peaxi162Scf00438g00019' => 'pax', 'Peaxi162Scf00549g00019' => 'pax', 'PGR031G0929' => 'pgr', 'PGR042G3125' => 'pgr', 'PGR044G0566' => 'pgr', 'PGR083G0670' => 'pgr', 'PGR102G0179' => 'pgr', 'PGR102G3371' => 'pgr', 'PGR119G2307' => 'pgr', 'PGSC0003DMG400000896' => 'stu', 'PGSC0003DMG400003393' => 'stu', 'PGSC0003DMG400003724' => 'stu', 'PGSC0003DMG400004007' => 'stu', 'PGSC0003DMG400015142' => 'stu', 'PGSC0003DMG400023213' => 'stu', 'PGSC0003DMG400024807' => 'stu', 'PGSC0003DMG400024808' => 'stu', 'PGSC0003DMG400024840' => 'stu', 'PGSC0003DMG400025778' => 'stu', 'PGSC0003DMG400032290' => 'stu', 'PGSC0003DMG400034722' => 'stu', 'PGSC0003DMG401024806' => 'stu', 'Phvul.001G008000' => 'pvu', 'Phvul.002G017000' => 'pvu', 'Phvul.002G109900' => 'pvu', 'Phvul.002G276100' => 'pvu', 'Phvul.003G047700' => 'pvu', 'Phvul.003G242100' => 'pvu', 'Phvul.008G161100' => 'pvu', 'Phvul.009G015700' => 'pvu', 'Phvul.009G125200' => 'pvu', 'Phvul.009G152200' => 'pvu', 'Potri.001G304200' => 'ptr', 'Potri.002G024400' => 'ptr', 'Potri.002G083400' => 'ptr', 'Potri.005G070400' => 'ptr', 'Potri.005G140300' => 'ptr', 'Potri.005G178100' => 'ptr', 'Potri.005G237100' => 'ptr', 'Potri.007G046100' => 'ptr', 'Potri.007G098500' => 'ptr', 'Potri.009G099500' => 'ptr', 'Pp3c15_20060' => 'ppa', 'Pp3c20_12080' => 'ppa', 'Pp3c20_4230' => 'ppa', 'Pp3c23_10840' => 'ppa', 'Pp3c23_16640' => 'ppa', 'Pp3c23_18780' => 'ppa', 'Pp3c24_19890' => 'ppa', 'Pp3c26_8330' => 'ppa', 'Pp3c3_8660' => 'ppa', 'Pp3c8_24062' => 'ppa', 'Pp3c9_13770' => 'ppa', 'Prupe.1G368000' => 'ppe', 'Prupe.1G495600' => 'ppe', 'Prupe.4G281900' => 'ppe', 'Prupe.6G231800' => 'ppe', 'Prupe.8G129200' => 'ppe', 'Psat1g005200' => 'psa', 'Psat2g048760' => 'psa', 'Psat2g155200' => 'psa', 'Psat2g168560' => 'psa', 'Psat4g085480' => 'psa', 'Psat5g015120' => 'psa', 'Psat5g059000' => 'psa', 'Psat6g003640' => 'psa', 'Psat6g040560' => 'psa', 'Psat6g046680' => 'psa', 'Psat7g043400' => 'psa', 'Psat7g126360' => 'psa', 'PSO170G6784' => 'pso', 'PSO170G6790' => 'pso', 'PSO210G5181' => 'pso', 'PSO478G4922' => 'pso', 'PSO528G0099' => 'pso', 'PSO541G0216' => 'pso', 'PSO541G2907' => 'pso', 'PSO675G1061' => 'pso', 'PSO675G7683' => 'pso', 'QL02p011137' => 'qlo', 'QL06p040712' => 'qlo', 'QL09p034567' => 'qlo', 'QL10p040142' => 'qlo', 'QL11p034868' => 'qlo', 'RcHm_v2.0_Chr2g0106201' => 'rch', 'RcHm_v2.0_Chr2g0123661' => 'rch', 'RcHm_v2.0_Chr6g0256631' => 'rch', 'RcHm_v2.0_Chr6g0295851' => 'rch', 'RcHm_v2.0_Chr6g0302571' => 'rch', 'Rhsim06G0023100' => 'rsi', 'Rhsim06G0103200' => 'rsi', 'Rhsim07G0246200' => 'rsi', 'Rhsim08G0001900' => 'rsi', 'Rhsim08G0099300' => 'rsi', 'Rhsim10G0129600' => 'rsi', 'Rhsim11G0164000' => 'rsi', 'Rhsim12G0020200' => 'rsi', 'Sabra02G0019900' => 'sbr', 'Sabra02G0065400' => 'sbr', 'Sabra05G0057200' => 'sbr', 'Sabra05G0134500' => 'sbr', 'Sabra05G0183300' => 'sbr', 'Sabra07G0041200' => 'sbr', 'Sabra07G0081900' => 'sbr', 'Sabra09G0075800' => 'sbr', 'Sabra16G0190900' => 'sbr', 'SalBow5G1172' => 'sbo', 'SalBow6G4941' => 'sbo', 'SalBow7G0427' => 'sbo', 'SalBow7G1808' => 'sbo', 'SalBow7G4418' => 'sbo', 'SalBow8G5386' => 'sbo', 'Sc02g0008480' => 'sci', 'Sc15g0005090' => 'sci', 'Sc16g0004590' => 'sci', 'Sc16g0009680' => 'sci', 'Sed0008177' => 'sed', 'Sed0008717' => 'sed', 'Sed0010870' => 'sed', 'Sed0013030' => 'sed', 'Sed0020043' => 'sed', 'Sed0021577' => 'sed', 'SEGI_09091' => 'sgi', 'SEGI_20453' => 'sgi', 'SEGI_23445' => 'sgi', 'SEGI_33773' => 'sgi', 'SEGI_40006' => 'sgi', 'SGA_v2.0_scaffold11G05900' => 'sas', 'SGA_v2.0_scaffold12G05984' => 'sas', 'SGA_v2.0_scaffold143G35808' => 'sas', 'SGA_v2.0_scaffold25G11129' => 'sas', 'SGA_v2.0_scaffold28G11995' => 'sas', 'SGA_v2.0_scaffold30G12351' => 'sas', 'SGA_v2.0_scaffold34G13617' => 'sas', 'SGA_v2.0_scaffold7G03529' => 'sas', 'SGA_v2.0_scaffold90G27614' => 'sas', 'SGA_v2.0_scaffold92G28252' => 'sas', 'SHI08079' => 'shi', 'SMO097G0001' => 'smo', 'SMO118G0020' => 'smo', 'SMO174G0081' => 'smo', 'SMO276G0005' => 'smo', 'SMO367G1216' => 'smo', 'Solyc01g107890.3' => 'sly', 'Solyc02g093160.3' => 'sly', 'Solyc04g064950.1' => 'sly', 'Solyc04g081260.3' => 'sly', 'Solyc06g060320.4' => 'sly', 'Solyc07g045570.3' => 'sly', 'Solyc07g045580.1' => 'sly', 'Solyc07g054970.1' => 'sly', 'Solyc11g012860.3' => 'sly', 'Solyc12g068070.2' => 'sly', 'Sopen01g050060' => 'spe', 'Sopen02g037730' => 'spe', 'Sopen04g034880' => 'spe', 'Sopen06g020440' => 'spe', 'Sopen11g007600' => 'spe', 'Sopen12g027110' => 'spe', 'Sp1g17630' => 'spa', 'Sp1g19370' => 'spa', 'Sp1g34850' => 'spa', 'Sp3g04120' => 'spa', 'Sp3g17430' => 'spa', 'Sp4g02370' => 'spa', 'Sp5g32730' => 'spa', 'Sp7g33900' => 'spa', 'TAR376G0691' => 'tar', 'TAR376G0849' => 'tar', 'TAR381G0060' => 'tar', 'TAR381G0379' => 'tar', 'TAR381G1150' => 'tar', 'TAR381G1297' => 'tar', 'TAR625G0483' => 'tar', 'TAR625G0928' => 'tar', 'TAR628G0002' => 'tar', 'TAR628G0848' => 'tar', 'THA.LOC104801869' => 'tha', 'THA.LOC104806897' => 'tha', 'THA.LOC104807592' => 'tha', 'THA.LOC104811389' => 'tha', 'THA.LOC104815188' => 'tha', 'THA.LOC104819481' => 'tha', 'THA.LOC104819756' => 'tha', 'THA.LOC104824769' => 'tha', 'THA.LOC104825366' => 'tha', 'Thecc.01G020600' => 'tca', 'Thecc.01G060100' => 'tca', 'Thecc.01G142000' => 'tca', 'Thecc.02G103700' => 'tca', 'Thecc.08G041600' => 'tca', 'Thecc.08G125700' => 'tca', 'Thhalv10000040m.g' => 'esa', 'Thhalv10006694m.g' => 'esa', 'Thhalv10011202m.g' => 'esa', 'Thhalv10019596m.g' => 'esa', 'Thhalv10020157m.g' => 'esa', 'Thhalv10020230m.g' => 'esa', 'Thhalv10024308m.g' => 'esa', 'TPR.G12581' => 'tpr', 'TPR.G14582' => 'tpr', 'TPR.G1739' => 'tpr', 'TPR.G18180' => 'tpr', 'TPR.G18200' => 'tpr', 'TPR.G25803' => 'tpr', 'TPR.G26883' => 'tpr', 'TPR.G30293' => 'tpr', 'TPR.G31871' => 'tpr', 'TPR.G34368' => 'tpr', 'TPR.G37430' => 'tpr', 'TPR.G693' => 'tpr', 'TPR.G7853' => 'tpr', 'TWI09G0346' => 'twi', 'TWI12G1258' => 'twi', 'TWI31G1307' => 'twi', 'TWI36G1447' => 'twi', 'TWI56G0963' => 'twi', 'TWI60G0616' => 'twi', 'TWI73G1036' => 'twi', 'TWI75G0583' => 'twi', 'TWI79G0039' => 'twi', 'TWI79G0417' => 'twi', 'unitig_0.g2116' => 'ugi', 'unitig_0.g2117' => 'ugi', 'unitig_0.g95' => 'ugi', 'unitig_3.g31658' => 'ugi', 'unitig_3.g31659' => 'ugi', 'unitig_37.g12354' => 'ugi', 'unitig_37.g13016' => 'ugi', 'unitig_46.g17963' => 'ugi', 'unitig_46.g18654' => 'ugi', 'unitig_747.g21493' => 'ugi', 'unitig_748.g7763' => 'ugi', 'unitig_748.g8401' => 'ugi', 'unitig_748.g8603' => 'ugi', 'unitig_748.g8761' => 'ugi', 'unitig_749.g13858' => 'ugi', 'vmacro02028' => 'vma', 'vmacro04340' => 'vma', 'vmacro12533' => 'vma', 'vmacro12770' => 'vma', 'vmacro17961' => 'vma', 'vmacro18674' => 'vma', 'vmacro21714' => 'vma', 'VMungo0251G1475' => 'vmu', 'VMungo0251G3219' => 'vmu', 'VMungo0251G3595' => 'vmu', 'VMungo0647G0885' => 'vmu', 'VMungo0647G1333' => 'vmu', 'VMungo1215G0018' => 'vmu', 'VMungo1215G0356' => 'vmu', 'VMungo1309G0833' => 'vmu', 'VMungo1309G1180' => 'vmu', 'VMungo1309G2795' => 'vmu', 'Zm00001eb010560' => 'zma', 'Zm00001eb105670' => 'zma', 'Zm00001eb139110' => 'zma', 'Zm00001eb200890' => 'zma', 'Zm00001eb247110' => 'zma', 'Zm00001eb322310' => 'zma', 'Zm00001eb398680' => 'zma', 'Zm00001eb407890' => 'zma', 'Zm00001eb426080' => 'zma', 'Zm00001eb432130' => 'zma' ) $gf_id = 'HOM05D000654' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000654' ) $data_identifier = 'HOM05D000654' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 25, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 13, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 18, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 21, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 2, 'hma' => (int) 7, 'vpl' => (int) 9, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 8, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 6, 'oeu' => (int) 15, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 15, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1